* Mor u-Ḳeẓi'ah, novellæ on the Oraḥ. Ḥayyim, in two parts: the first part, Miṭpaḥat Sefarim, being an expurgation of the Zohar; the second, a criticism on "Emunat Ḥakamim" and "Mishnat Ḥakamim," and polemical letters addressed to the rabbi of Königsberg. Altona, 1761-68.
* Ẓiẓim u-Feraḥim, a collection of cabalistic Qabalistic articles arranged in alphabetical order. Altona, 1768.(see image) Page from Ṭur Orah Ḥayyim, Bearing Autograph Annotations of Jacob Emden. Printed at Berlin, 1702.(In the Columbia University Library, New York.)* Luaḥ Eresh, grammatical notes on the prayers, and a criticism of Solomon Hena's "Sha'are Tefillah." Altona, 1769.
* Shemesh Ẓedaḳah. Altona, 1772.
* Dibre Emet u-Mishpaṭ Shalom (n. d. and n. p.).
===Unpublished Rabbinical Works===
* Ḳishshurim le-Ya'aḳob, collection of sermons.
* Ẓa'aḳat Damim, refutation of the blood accusation in Poland.
* Megillat Sefer, containing biographies of himself and of his father.
===Provided Annotated to these works===
* Saadia Gaon's "Sefer ha-Pedut we ha-Purḳan"
* Elijah Levita's "Meturgeman"
* Moses Graf's "Wayaḳel Mosheh"
* Benjamin Musafia's "Musaf he-'Aruk."
* Wagenaar, in his "Toledot Ya'abeẓ" attributes to Emden the cabalistic Qabalistic "Maḥnayim."
